rs13216410 chr6:2765336 C>T
- Sequence
attggggcaaacggccacggacta[C/T]acttacttacatgccgcgcgaggc
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) T47D (invasive ductal carcinoma) neutrophils
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN HIF3A_HUMAN SRBP2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.48 | 0.54 | 1.05 | n/a | No Hit | |||
| CDN1B_HUMAN | 2.52 | -2.13 | 1.00 | n/a | n/a | |||
| HIF3A_HUMAN | 3.19 | n/a | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 2.58 | -0.17 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood