rs13217914 chr6:30769775 G>A
- Sequence
gctttgttccagccccactgatgg[G/A]cctcctgccctcccccatgcagga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes Detroit 562 (Pharyngeal squamous cell carcinoma) BIN-67 (Ovarian small cell carcinoma, hypercalcemic type)
- ASB for transcription factors
- STAT1_HUMAN TF65_HUMAN IKZF2_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.34 | -0.59 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.14 | 0.34 | 2.35 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.62 | -1.39 | 1.00 | n/a | n/a | |||
| SMCA4_HUMAN | 1.07 | 0.44 | 1.26 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood