rs13219902 chr6:138107590 T>G
- Sequence
gccgctggtaaacaggctgggttc[T/G]ggtgacaccgggcggcggcggaag
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TYY1_HUMAN ESR1_HUMAN STAG1_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | -0.55 | 2.02 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.21 | 0.44 | 1.63 | 0.89 | Weak Discordant | |||
| STAG1_HUMAN | 1.11 | 1.84 | 1.00 | n/a | n/a | |||
| ZFX_HUMAN | -0.41 | 1.22 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Liver, Thyroid