rs1322 chr2:43294028 G>A
- Sequence
aaaccacagcccttcttttttgac[G/A]tggtctactgatggtggtgagtca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MDM(monocyte derived macrophages) GM19239 (male B-cells lymphoblastoid cell line) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- CREB1_HUMAN ESR1_HUMAN TF65_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 2.21 | -1.91 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.61 | 1.52 | 1.61 | n/a | No Hit | |||
| TF65_HUMAN | 2.75 | -5.54 | 2.67 | n/a | No Hit | |||
| STAG1_HUMAN | 0.68 | 1.66 | 1.04 | n/a | n/a | |||
| FOXA1_HUMAN | 0.36 | 0.82 | 1.42 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting blood glucose, homa-b, salmonella-induced pyroptosis, serum creatinine, systolic blood pressure (sbp), total cholesterol, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood