rs13220395 chr6:26055140 G>A
- Sequence
gcattccttcgttgccacaggaat[G/A]agaaattaacagcagaggaatgta
- ASB in cell types
- adipose foreskin keratinocyte
- ASB for transcription factors
- PPARG_HUMAN TEAD1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PPARG_HUMAN | 2.90 | n/a | 2.50 | n/a | No Hit | |||
| TEAD1_HUMAN | 2.10 | -1.43 | 1.50 | -5.00 | Concordant | |||
| FOXK2_HUMAN | 1.79 | -3.28 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, diabetic retinopathy in type 2 diabetes mellitus, hdl cholesterol, infant head circumference, ldl cholesterol, mean corpuscular hemoglobin concentration (mchc), rheumatoid arthritis, serum creatinine
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood