rs13220978 chr7:90180497 T>C
- Sequence
ttcatcaaacaattgttatgtgaa[T/C]attgcatcagcttggtccttttga
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) SU-DHL-1 (Anaplastic large cell lymphoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- TF65_HUMAN ANDR_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 1.86 | -4.53 | 2.67 | n/a | No Hit | |||
| ANDR_HUMAN | 2.32 | -1.30 | 2.00 | 2.96 | Discordant | |||
| CEBPB_HUMAN | 2.68 | -0.05 | 1.88 | -1.25 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood