rs13227218 chr7:67620797 C>G

Sequence
atctggctcaaccagttcggcaat[C/G]ccacccagaacagaagacagcaag
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
TLE3_HUMAN GRHL2_HUMAN GATA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TLE3_HUMAN -1.34 3.19 1.002.8·10-4 2.00 n/a n/a
GRHL2_HUMAN 0.42 1.36 1.003.6·10-4 1.74 n/a No Hit
GATA3_HUMAN -0.06 1.12 1.007.9·10-3 1.70 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  height,  mitral annular calcium

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