rs13228827 chr7:33062902 G>A
- Sequence
catcgatgggagaggccaggacgc[G/A]gcgggaggggtgtggcctgtgccc
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- ZSC22_HUMAN STAT1_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZSC22_HUMAN | -2.24 | 2.24 | 1.00 | -0.29 | Weak Discordant | |||
| STAT1_HUMAN | 0.14 | 2.93 | 2.00 | n/a | No Hit | |||
| TYY1_HUMAN | -0.89 | 1.66 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Uterus, Whole_Blood