rs13230107 chr7:74393901 A>C
- Sequence
tccagtaggaacaaaccagccagg[A/C]ccctggccagggttccagggctgc
- ASB in cell types
- LNCaP (prostate carcinoma) GM12892 (female B-cells lymphoblastoid cell line) VCaP (prostate carcinoma) HUES64 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN CEBPB_HUMAN ATF3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.16 | -0.64 | 1.41 | n/a | No Hit | |||
| RAD21_HUMAN | 3.87 | -4.01 | 1.00 | n/a | n/a | |||
| CEBPB_HUMAN | 2.46 | -4.37 | 1.50 | n/a | No Hit | |||
| ATF3_HUMAN | 2.25 | -1.83 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Stomach