rs13232414 chr7:103254327 C>T

Sequence
taatttcaacttatcacctgagac[C/T]ggtctcactgctgcttcactgtgg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
SOX6_HUMAN MEIS2_HUMAN NCOR1_HUMAN HDAC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SOX6_HUMAN 3.72 -3.46 2.3·10-71.00 1.00 n/a No Hit
MEIS2_HUMAN 3.29 -2.95 4.9·10-71.00 1.00 n/a No Hit
NCOR1_HUMAN 2.73 n/a 6.9·10-71.00 2.25 n/a n/a
HDAC1_HUMAN 2.85 -2.37 3.8·10-61.00 1.00 n/a n/a
REQU_HUMAN 2.90 -2.80 5.5·10-61.00 1.25 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Testis,  Thyroid,  Whole_Blood

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