rs13232427 chr7:149624050 A>G

Sequence
gctgtgaggacagaaggacagact[A/G]aggcctcaacaggacttggtgcag
ASB in cell types
K562 (myelogenous leukemia) HEK293 (embryonic kidney) HCT-116 (colon carcinoma)
ASB for transcription factors
ZFX_HUMAN NFIC_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZFX_HUMAN -0.12 1.20 1.003.8·10-3 1.33 -0.71 Weak Discordant
NFIC_HUMAN -3.04 2.00 1.000.02 1.50 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

ZFX_HUMAN Weak Discordant
ZFX_HUMAN pic

Genetic associations

GTEx eQTL Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

Download