rs13233571 chr7:73556901 C>T

Sequence
gtacatagtttgcaaaggactctc[C/T]tgacagccgccggggcagcaagag
ASB in cell types
K562 (myelogenous leukemia) 22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 3.06 n/a 4.7·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI c-reactive protein levels,  hdl cholesterol levels
GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (geographic atrophy),  coronary artery disease (cad),  gamma-glutamyl transferase (ggt),  hdl cholesterol,  microalbuminuria,  serum urate,  total cholesterol,  triglycerides,  triglycerides change with statins,  urinary albumin-to-creatinine ratio
Finemapping c reactive protein,  hdl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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