rs13240595 chr7:129091723 C>A
- Sequence
actccgcctggctaggggaacaga[C/A]gccaggggctgactgtaacaaaga
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line) CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.27 | 0.69 | 1.70 | n/a | No Hit | |||
| STAT1_HUMAN | 2.87 | -1.87 | 2.00 | 4.09 | Discordant | |||
| FOXK2_HUMAN | 2.87 | -2.94 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Lung, Nerve_Tibial, Pancreas, Testis, Whole_Blood