rs13242678 chr7:147413469 T>C
- Sequence
caaaagttatttacatggtaaaca[T/C]ctgtgccaagaggagtactctcaa
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.34 | -0.15 | 1.80 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.21 | -0.08 | 1.50 | -0.69 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, fasting blood glucose, mitral annular calcium, rheumatoid arthritis, triglycerides