rs13243678 chr7:149028598 A>G
- Sequence
ggccaatcccagactgacgccggc[A/G]cggaccgcgcgcgcctcggccgcg
- ASB in cell types
- HCT-116 (colon carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- MAX_HUMAN STAG1_HUMAN CREB1_HUMAN HCFC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | -0.04 | 1.80 | 1.25 | n/a | No Hit | |||
| STAG1_HUMAN | 0.14 | 1.63 | 1.13 | n/a | n/a | |||
| CREB1_HUMAN | 0.27 | 1.96 | 1.00 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.79 | n/a | 2.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood