rs13244430 chr7:47180378 T>A
- Sequence
cccatggcagctaggccaagagat[T/A]cctgatcagagactgccatctgct
- ASB in cell types
- MS-1 (Small cell lung carcinoma) T47D (invasive ductal carcinoma) H929 (plasma cell myeloma) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.09 | 0.59 | 1.22 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, total cholesterol