rs13251554 chr8:126876839 C>T
- Sequence
ccccagttttaaagccaggggcgc[C/T]ggggtgtgtttgtgtttgtgcctg
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HeLa S3 (cervical adenocarcinoma) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC3_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.19 | 1.12 | 1.62 | n/a | No Hit | |||
| STAG1_HUMAN | 0.04 | 0.56 | 1.19 | n/a | n/a | |||
| SMC3_HUMAN | 0.23 | 1.43 | 1.36 | n/a | n/a | |||
| SMC1A_HUMAN | 0.03 | 1.95 | 1.50 | n/a | n/a |
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