rs13257337 chr8:19624587 C>A

Sequence
tttagttctcttttgaatcactct[C/A]atgtgttaatggagtttggagtct
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
MTA2_HUMAN ELF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTA2_HUMAN 3.30 -2.95 4.2·10-61.00 1.00 n/a n/a
ELF1_HUMAN 2.17 n/a 0.041.00 1.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  cystatin c in serum,  hdl cholesterol,  height,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Colon_Transverse,  Heart_Atrial_Appendage,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

Download