rs13259845 chr8:143844074 A>G
- Sequence
agctaaggggacatagtgaggagt[A/G]accagaagacaagagtgcgagccc
- ASB in cell types
- KMS-11 (Plasma cell myeloma) GM19193 (female B-cells Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN HNF4A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.94 | 0.14 | 1.41 | n/a | No Hit | |||
| STAG1_HUMAN | 2.25 | -0.33 | 1.20 | n/a | n/a | |||
| HNF4A_HUMAN | 2.54 | -1.75 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid