rs13259875 chr8:19638087 T>A
- Sequence
aaccttgacaaccaacctaaactg[T/A]tagtctcttgaaaccaacgactgt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) ARP-1(Plasma cell myeloma) GM02630 (Fanconi anemi)
- ASB for transcription factors
- COT1_HUMAN IKZF2_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | -2.24 | 2.67 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.85 | 1.77 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.31 | 1.37 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, parkinsons disease, triglycerides