rs13260141 chr8:142545759 A>G
- Sequence
tgtctccagcagggggcagcctga[A/G]cccccgaagggagcctagttgggg
- ASB in cell types
- A549 (lung carcinoma) HeLa (cervical adenocarcinoma) upper lobe of left lung RH4 (alveolar rhabdomyosarcoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN JUN_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.62 | 1.01 | 1.46 | n/a | No Hit | |||
| STAG1_HUMAN | -0.76 | 1.37 | 1.07 | n/a | n/a | |||
| JUN_HUMAN | 0.11 | 1.47 | 3.00 | n/a | No Hit | |||
| SMC3_HUMAN | 0.33 | 0.94 | 1.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Skin_Sun_Exposed_Lower_leg, Whole_Blood