rs13274138 chr8:33513838 T>G
- Sequence
gctcactgcaacccccacctccgg[T/G]tttcgagagattgtcctacctcag
- ASB in cell types
- neural cell MV-4-11 (Childhood acute monocytic leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MXI1_HUMAN BRD4_HUMAN ERCC3_HUMAN TIF1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MXI1_HUMAN | -2.17 | 2.60 | 1.00 | n/a | No Hit | |||
| BRD4_HUMAN | 0.29 | 1.39 | 2.73 | n/a | n/a | |||
| ERCC3_HUMAN | -2.02 | 2.17 | 1.00 | n/a | n/a | |||
| TIF1B_HUMAN | 1.71 | -0.54 | 1.50 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood