rs13276393 chr8:55773374 C>A
- Sequence
acccgtgtgaaagaagccaagcgg[C/A]ggctgcagcccgggccgcgatggg
- ASB in cell types
- fetal bone marrow-derived mononuclear cells K562 (myelogenous leukemia) primary B-CLL cells adult erythroblasts
- ASB for transcription factors
- KMT2A_HUMAN KLF1_HUMAN SMAD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | 0.17 | 3.03 | 1.25 | -1.15 | Weak Discordant | |||
| KLF1_HUMAN | -0.18 | 2.24 | 1.50 | n/a | No Hit | |||
| SMAD2_HUMAN | -0.87 | 1.90 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood