rs132835 chr22:45159948 G>A

Sequence
tcgtaacaggaatgactccaggtc[G/A]aggtttaagcctacctaaaatgaa
ASB in cell types
liver adrenal gland
ASB for transcription factors
HNF4A_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HNF4A_HUMAN -3.38 3.23 1.001.3·10-4 1.00 2.27 Concordant
CTCF_HUMAN 0.34 1.16 1.004.0·10-4 1.28 n/a No Hit
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Motif analysis

HNF4A_HUMAN Concordant
HNF4A_HUMAN pic

Genetic associations

GRASP mitral annular calcium,  total cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Kidney_Cortex,  Liver,  Lung,  Spleen,  Testis,  Thyroid

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