rs13290725 chr9:112076854 G>A
- Sequence
tttcaagagggagggagtgtcaac[G/A]ctatcgaagaaatcagataagaac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ZN687_HUMAN IKZF1_HUMAN TBX21_HUMAN SRF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN687_HUMAN | n/a | 3.94 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | -1.26 | 3.15 | 1.75 | n/a | n/a | |||
| TBX21_HUMAN | n/a | 3.40 | 1.00 | n/a | No Hit | |||
| SRF_HUMAN | n/a | 3.21 | 1.00 | n/a | No Hit | |||
| RAD51_HUMAN | -2.69 | 3.00 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), ldl cholesterol change with statins, suicide attempts in bipolar disorder (males)