rs133016 chr22:38176575 C>T
- Sequence
cagagcaggctggaaactcagggt[C/T]cactcagagtgccaagctgcccca
- ASB in cell types
- BEAS-2B (bronchial epithelium) macrophages form periferal blood
- ASB for transcription factors
- GCR_HUMAN ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.35 | 1.76 | 1.50 | 0.44 | Weak Concordant | |||
| ERG_HUMAN | -2.07 | 1.86 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP birth weight, body mass index (bmi), hdl cholesterol, height, infant head circumference, ldl cholesterol, myopia, parkinsons disease, serum creatinine, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood