rs13306345 chr1:169546636 T>A
- Sequence
agtactggtacaagaacagacgca[T/A]agaccaatggaacagaatagagaa
- ASB in cell types
- A549 (lung carcinoma) HMEC (human mammary epithelial cells) Kelly (neuroblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN STAG2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.90 | 0.29 | 1.70 | n/a | n/a | |||
| SMC3_HUMAN | 1.90 | -0.07 | 1.80 | n/a | n/a | |||
| CTCF_HUMAN | 1.31 | 0.39 | 1.55 | n/a | No Hit | |||
| STAG2_HUMAN | 2.87 | -2.94 | 1.00 | n/a | n/a | |||
| SMC1A_HUMAN | 1.61 | -0.10 | 1.17 | n/a | n/a |
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