rs13333528 chr16:68756599 C>T
- Sequence
agctgcttggtgacgttcatgtgg[C/T]tggtttcattaccacctaactccc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Th1-cells GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TBX21_HUMAN RUNX3_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -2.00 | 2.06 | 1.50 | n/a | No Hit | |||
| RUNX3_HUMAN | -2.01 | 2.38 | 1.00 | 3.68 | Concordant | |||
| STAG1_HUMAN | -0.10 | 1.41 | 1.07 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Spleen, Testis, Whole_Blood