rs13337282 chr16:56609605 A>G
- Sequence
tggatggaaatgtgagccgttaag[A/G]aagagtgcattctggcaagccagg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) breast tumor 22RV1 (prostate carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- SPI1_HUMAN ESR1_HUMAN ANDR_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | -0.22 | 2.05 | 1.00 | 4.38 | Concordant | |||
| ESR1_HUMAN | 2.67 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.17 | -0.56 | 2.00 | n/a | No Hit | |||
| SMCA4_HUMAN | -0.20 | 1.31 | 1.14 | n/a | n/a | |||
| STAT1_HUMAN | 1.42 | n/a | 4.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood