rs13344547 chr19:41439943 G>T
- Sequence
cggaaggggccggtcttatcccac[G/T]ctcctggttcagcgcgaacttatt
- ASB in cell types
- neutrophils from periferal blood thymus-derived CD34- cells HCT-116 (colon carcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- ZFHX2_HUMAN BC11B_HUMAN ELF1_HUMAN CDN1B_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFHX2_HUMAN | 3.15 | n/a | 3.00 | n/a | n/a | |||
| BC11B_HUMAN | -0.59 | 2.87 | 3.75 | n/a | n/a | |||
| ELF1_HUMAN | 1.87 | -1.32 | 1.00 | n/a | No Hit | |||
| CDN1B_HUMAN | 1.44 | 0.22 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 1.38 | 0.46 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, fasting insulin, height, homa-b
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Spleen, Stomach, Testis, Thyroid, Whole_Blood