rs13344984 chr19:52190024 T>C

Sequence
gcccccacgcccgcccttccttct[T/C]ctcccagcattgccccccccacgt
ASB in cell types
renal cortex breast tumor LNCaP (prostate carcinoma)
ASB for transcription factors
CREB1_HUMAN ESR1_HUMAN GABPA_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CREB1_HUMAN 1.62 2.62 2.6·10-37.7·10-4 1.11 n/a No Hit
ESR1_HUMAN 2.96 -0.97 1.5·10-31.00 2.00 n/a No Hit
GABPA_HUMAN 1.32 -0.55 8.3·10-31.00 1.31 n/a No Hit
CTCF_HUMAN 1.02 -0.02 8.4·10-31.00 1.17 n/a No Hit
TYY1_HUMAN 1.70 -0.36 0.021.00 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP refractive error,  serum creatinine,  sporadic creutzfeldt-jakob disease,  tetrology of fallot,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid

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