rs13376177 chr1:39539462 C>G
- Sequence
ctactggcattggaaggaagggat[C/G]agggagggactctagatgtcctgc
- ASB in cell types
- foreskin keratinocyte 22RV1 (prostate carcinoma) K562 (myelogenous leukemia) esophagus squamous epithelium
- ASB for transcription factors
- CHAP1_HUMAN ANDR_HUMAN CTBP1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CHAP1_HUMAN | 2.17 | -1.92 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.60 | n/a | 2.00 | n/a | No Hit | |||
| CTBP1_HUMAN | -1.91 | 2.40 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Ovary, Stomach, Thyroid