rs13377521 chr11:83093089 G>A
- Sequence
cttttccgaaggcacagtcttgtg[G/A]gggagggaacaggatggtctccat
- ASB in cell types
- liver VCaP (prostate carcinoma) A1-2 (breast cancer cells) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- PRGR_HUMAN GCR_HUMAN CREB1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRGR_HUMAN | -0.13 | 1.54 | 1.47 | n/a | No Hit | |||
| GCR_HUMAN | -0.66 | 1.85 | 1.83 | n/a | No Hit | |||
| CREB1_HUMAN | 2.35 | -2.04 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | 1.53 | -1.05 | 1.00 | n/a | n/a | |||
| RXRA_HUMAN | 1.72 | -0.71 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid