rs1338290 chr1:210292122 G>A
- Sequence
tttagcagcaaatagcaagactcc[G/A]ggcctggtgggtgtgggtgcccgc
- ASB in cell types
- HEK293 (embryonic kidney) iPSC (induced pluripotent stem cells) SYO-1(Biphasic synovial sarcoma)
- ASB for transcription factors
- ZIC2_HUMAN AP2A_HUMAN ZN398_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZIC2_HUMAN | 3.37 | n/a | 2.00 | n/a | No Hit | |||
| AP2A_HUMAN | 2.51 | -2.35 | 1.00 | 1.02 | Weak Discordant | |||
| ZN398_HUMAN | 2.56 | -4.79 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Lung, Nerve_Tibial, Pituitary, Testis, Thyroid, Whole_Blood