rs13390816 chr2:240894193 T>C
- Sequence
cgccgggcatccccaagcagatca[T/C]ggcctctcgcgaaggtgagctgac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- ESR1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.98 | 0.91 | 1.92 | n/a | No Hit | |||
| JUN_HUMAN | -1.47 | 1.86 | 1.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Kidney_Cortex, Liver, Lung, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid