rs13395911 chr2:232655544 A>T
- Sequence
ggaaagttccacactgaacctgtt[A/T]actttgactgggactccgtgtaac
- ASB in cell types
- LHSAR (prostate epithelial cells) 22RV1 (prostate carcinoma) breast tumor MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.70 | 2.52 | 1.62 | n/a | No Hit | |||
| FOXA1_HUMAN | -1.86 | 2.24 | 2.00 | 9.30 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Breast_Mammary_Tissue, Liver, Minor_Salivary_Gland, Prostate, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid