rs13401811 chr2:110858527 G>A
- Sequence
gtgatgtcacctgcaggtgtgtga[G/A]cctgtggtagcagtctgctgcctg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02255 (Lymphoblastoid Cell Lines) germinal center B-cells
- ASB for transcription factors
- TBX21_HUMAN IKZF2_HUMAN MEF2B_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | 2.54 | -2.58 | 1.00 | 0.33 | Weak Discordant | |||
| IKZF2_HUMAN | 2.12 | -0.18 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | 2.28 | -1.98 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.79 | -0.05 | 1.19 | n/a | n/a | |||
| BHE40_HUMAN | 1.66 | -2.85 | 1.33 | n/a | No Hit |
Items per page:
1 – 5 of 6
Motif analysis
