rs13403222 chr2:155043868 G>A
- Sequence
ctgtgagaacaactaagaagggtc[G/A]tgtcacctgcctccacaagttgtc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7L-P(immortalized breast epithelial cell line) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.10 | 2.75 | 1.17 | n/a | No Hit | |||
| ESR1_HUMAN | -1.33 | 2.70 | 1.88 | 1.30 | Weak Concordant | |||
| GATA3_HUMAN | -3.78 | 3.67 | 1.00 | n/a | No Hit |
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Motif analysis
