rs13404307 chr2:30447348 C>A
- Sequence
gagccccagcttgcccacgcaccc[C/A]actcggcgtcgcgcggcgtgccct
- ASB in cell types
- HepG2 (hepatoblastoma) adult erythroblasts breast tumor GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TYY1_HUMAN HCFC1_HUMAN ESR1_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.91 | 1.05 | 2.00 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.68 | n/a | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.46 | -1.50 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.26 | n/a | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.14 | -4.09 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Whole_Blood