rs13405069 chr2:179574386 T>C
- Sequence
cttctcaatatttttaggagccag[T/C]gcaaacaacaaagtacaaagtcta
- ASB in cell types
- HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- FOXA2_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 1.42 | -0.00 | 1.60 | -4.29 | Concordant | |||
| TBP_HUMAN | 0.85 | 1.08 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP fasting blood glucose, fasting insulin, hdl cholesterol, hdl cholesterol change with statins, homa-ir, partial epilepsy