rs13405161 chr2:231614010 C>A

Sequence
gcaggagccggtggcggccagacg[C/A]aactcggcacaggcgtccgcgcct
ASB in cell types
22RV1 (prostate carcinoma) primary B-CLL cells breast tumor
ASB for transcription factors
ANDR_HUMAN BRD4_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 3.26 n/a 3.7·10-51.00 2.00 n/a No Hit
BRD4_HUMAN 1.76 0.85 2.4·10-30.35 1.38 n/a n/a
ESR1_HUMAN 2.66 -0.97 0.021.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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