rs13405396 chr2:8633979 C>T
- Sequence
ctccacatcactcggccacccaca[C/T]gacaagagcaccagcgtgcctggg
- ASB in cell types
- HepG2 (hepatoblastoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- TFE3_HUMAN FOXK2_HUMAN EGR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TFE3_HUMAN | n/a | 3.47 | 2.00 | 3.46 | Concordant | |||
| FOXK2_HUMAN | -4.88 | 2.54 | 2.00 | n/a | No Hit | |||
| EGR1_HUMAN | 1.80 | -1.34 | 1.00 | -2.14 | Concordant |
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Motif analysis
