rs13408211 chr2:185291278 T>C
- Sequence
acgccagtgcctgggaaggcaccc[T/C]ttacttggcagacctcggtctagc
- ASB in cell types
- HMEC (human mammary epithelial cells) foreskin keratinocyte WA01 (H1, human embryonic stem cells) GM18951 (B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN STAG2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.30 | 0.05 | 1.30 | 0.67 | Weak Discordant | |||
| RAD21_HUMAN | 1.88 | 0.19 | 1.50 | n/a | n/a | |||
| STAG1_HUMAN | 2.36 | -0.06 | 1.08 | n/a | n/a | |||
| STAG2_HUMAN | 2.79 | -2.52 | 1.00 | n/a | n/a | |||
| SMC1A_HUMAN | 1.68 | 0.47 | 1.33 | n/a | n/a |
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Motif analysis
