rs13412823 chr2:190534402 G>C
- Sequence
agcccagtaagacaggaagggcgg[G/C]cggggcctgcccgggagaccccaa
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) MOLM-13(acute monocytic leukemia(AML), Homo sapiens) CTV-1 (Adult T acute lymphoblastic leukemia) adult erythroblasts
- ASB for transcription factors
- TIF1A_HUMAN RBBP5_HUMAN SPT5H_HUMAN FLI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TIF1A_HUMAN | 2.28 | -1.25 | 1.00 | n/a | n/a | |||
| RBBP5_HUMAN | 2.94 | n/a | 3.00 | n/a | n/a | |||
| SPT5H_HUMAN | 1.37 | -0.80 | 1.00 | n/a | n/a | |||
| FLI1_HUMAN | 2.09 | -1.07 | 2.00 | -2.89 | Concordant | |||
| STAG1_HUMAN | 1.53 | -0.32 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood