rs13412879 chr2:190534652 C>G
- Sequence
gccaccaccgcccttggcgcggcc[C/G]catttcgttaggggtcagctccgt
- ASB in cell types
- 22RV1 (prostate carcinoma) adult erythroblasts HEK293 (embryonic kidney) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ANDR_HUMAN RBBP5_HUMAN ZBT10_HUMAN CDK9_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.95 | n/a | 2.00 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.01 | n/a | 3.00 | n/a | n/a | |||
| ZBT10_HUMAN | 2.83 | -2.82 | 1.00 | n/a | n/a | |||
| CDK9_HUMAN | 1.49 | -0.36 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood