rs13417896 chr2:113656432 A>G
- Sequence
tggaaaatcgggtcactcccaccc[A/G]aatactgtgcttttcctgcgggct
- ASB in cell types
- HEK293 (embryonic kidney) CFPAC-1(pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- ZBT26_HUMAN FOXA2_HUMAN KLF1_HUMAN ZN189_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | 2.05 | -1.87 | 1.00 | n/a | No Hit | |||
| FOXA2_HUMAN | 2.19 | -0.49 | 2.00 | n/a | No Hit | |||
| KLF1_HUMAN | 2.59 | -2.29 | 1.00 | -1.62 | Weak Concordant | |||
| ZN189_HUMAN | 2.41 | -2.01 | 1.00 | 0.44 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood