rs13425 chr18:36180187 G>A

Sequence
ttggcctcctgccatggtctttgc[G/A]ttccagccagcaaagaggaagaag
ASB in cell types
MCF10A (breast epithelial cells)
ASB for transcription factors
TEAD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TEAD4_HUMAN -2.74 3.06 1.005.6·10-3 1.50 6.59 Concordant
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Motif analysis

TEAD4_HUMAN Concordant
TEAD4_HUMAN pic

Genetic associations

GRASP adiponectin levels,  cystatin c in serum,  rheumatoid arthritis,  triglycerides
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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