rs136206 chr22:36359453 A>G
- Sequence
gccaagttgaaaccacacacgcgt[A/G]agggttatagccacctaatttgtt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SRF_HUMAN BHE40_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | 2.47 | -2.29 | 1.00 | n/a | No Hit | |||
| BHE40_HUMAN | n/a | 1.84 | 1.50 | n/a | No Hit | |||
| COT1_HUMAN | 1.97 | -1.66 | 1.00 | -0.88 | Weak Concordant |
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Motif analysis
