ADASTRA v6.1.0
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rs136343
chr22:30755548
T
>
C
Sequence
agcagcttccgaagtgtaggcctc[T/C]tttgacttcgggaagctttgtctt
ASB in cell types
GM02255 (Lymphoblastoid Cell Lines)
PC9 (lung adenocarcinoma)
GM18526 (B – cells Lymphoblastoid Cell Lines)
ASB for transcription factors
STAG1_HUMAN
NR2C1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN
0.48
0.06
8.9·10
-4
1.00
1.00
n/a
n/a
NR2C1_HUMAN
2.27
n/a
0.04
1.00
1.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
college completion
,
homa-b
,
lp-pla2 activity
,
microalbuminuria
,
years of education
GTEx eQTL
Brain_Caudate_basal_ganglia
,
Cells_Cultured_fibroblasts
,
Colon_Transverse
,
Skin_Sun_Exposed_Lower_leg
,
Whole_Blood
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)