rs1369312 chr15:65792069 G>T
- Sequence
ctcggagagcggcgccggaatccc[G/T]cacgcgcggtagcggaacacgagg
- ASB in cell types
- K562 (myelogenous leukemia) SUM159PT (Triple negative breast cancer) MDA-MB-453 (breast adenocarcinoma) breast tumor
- ASB for transcription factors
- BRD2_HUMAN ANDR_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD2_HUMAN | 1.56 | -0.13 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.25 | -4.30 | 1.83 | n/a | No Hit | |||
| TCF21_HUMAN | 1.82 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Muscle_Skeletal, Testis, Thyroid, Whole_Blood